GrippePaysBasV1, Main, Exploration, bibRecord, 000014

Genetic relationship between poultry and wild bird viruses during the highly pathogenic avian influenza H5N6 epidemic in the Netherlands, 2017-2018.

Identifieur interne : 000014 ( Main/Exploration ); précédent : 000013; suivant : 000015

Genetic relationship between poultry and wild bird viruses during the highly pathogenic avian influenza H5N6 epidemic in the Netherlands, 2017-2018.

Auteurs : N. Beerens [Pays-Bas] ; R. Heutink [Pays-Bas] ; S. Pritz-Verschuren [Pays-Bas] ; E A Germeraad [Pays-Bas] ; S A Bergervoet [Pays-Bas] ; F. Harders [Pays-Bas] ; A. Bossers [Pays-Bas] ; G. Koch [Pays-Bas]

Source :

Transboundary and emerging diseases [ 1865-1682 ] ; 2019.

RBID : pubmed:30874364

Descripteurs français

KwdFr :
- Animaux (MeSH), Animaux sauvages (MeSH), Grippe chez les oiseaux (virologie), Grippe chez les oiseaux (épidémiologie), Maladies de la volaille (virologie), Maladies de la volaille (épidémiologie), Oiseaux (MeSH), Pays-Bas (épidémiologie), Sous-type H5N8 du virus de la grippe A (génétique), Sous-type H5N8 du virus de la grippe A (isolement et purification), Sous-type H5N8 du virus de la grippe A (pathogénicité), Séquençage du génome entier (médecine vétérinaire), Virus de la grippe A (génétique), Virus de la grippe A (isolement et purification), Virus de la grippe A (pathogénicité), Volaille (MeSH), Épidémies (médecine vétérinaire), Épidémies de maladies (médecine vétérinaire).
MESH :
- génétique : Sous-type H5N8 du virus de la grippe A, Virus de la grippe A.
- isolement et purification : Sous-type H5N8 du virus de la grippe A, Virus de la grippe A.
- médecine vétérinaire : Séquençage du génome entier, Épidémies, Épidémies de maladies.
- pathogénicité : Sous-type H5N8 du virus de la grippe A, Virus de la grippe A.
- virologie : Grippe chez les oiseaux, Maladies de la volaille.
- épidémiologie : Grippe chez les oiseaux, Maladies de la volaille, Pays-Bas.
- Animaux, Animaux sauvages, Oiseaux, Volaille.
Wicri :
- geographic : Pays-Bas.

English descriptors

KwdEn :
- Animals (MeSH), Animals, Wild (MeSH), Birds (MeSH), Disease Outbreaks (veterinary), Epidemics (veterinary), Influenza A Virus, H5N8 Subtype (genetics), Influenza A Virus, H5N8 Subtype (isolation & purification), Influenza A Virus, H5N8 Subtype (pathogenicity), Influenza A virus (genetics), Influenza A virus (isolation & purification), Influenza A virus (pathogenicity), Influenza in Birds (epidemiology), Influenza in Birds (virology), Netherlands (epidemiology), Poultry (MeSH), Poultry Diseases (epidemiology), Poultry Diseases (virology), Whole Genome Sequencing (veterinary).
MESH :
- geographic , epidemiology : Netherlands.
- epidemiology : Influenza in Birds, Poultry Diseases.
- genetics : Influenza A Virus, H5N8 Subtype, Influenza A virus.
- isolation & purification : Influenza A Virus, H5N8 Subtype, Influenza A virus.
- pathogenicity : Influenza A Virus, H5N8 Subtype, Influenza A virus.
- veterinary : Disease Outbreaks, Epidemics, Whole Genome Sequencing.
- virology : Influenza in Birds, Poultry Diseases.
- Animals, Animals, Wild, Birds, Poultry.

Abstract

In the Netherlands, three commercial poultry farms and two hobby holdings were infected with highly pathogenic avian influenza (HPAI) H5N6 virus in the winter of 2017-2018. This H5N6 virus is a reassortant of HPAI H5N8 clade 2.3.4.4 group B viruses detected in Eurasia in 2016. H5N6 viruses were also detected in several dead wild birds during the winter. However, wild bird mortality was limited compared to the caused by the H5N8 group B virus in 2016-2017. H5N6 virus was not detected in wild birds after March, but in late summer infected wild birds were found again. In this study, the complete genome sequences of poultry and wild bird viruses were determined to study their genetic relationship. Genetic analysis showed that the outbreaks in poultry were not the result of farm-to-farm transmissions, but rather resulted from separate introductions from wild birds. Wild birds infected with viruses related to the first outbreak in poultry were found at short distances from the farm, within a short time frame. However, no wild bird viruses related to outbreaks 2 and 3 were detected. The H5N6 virus isolated in summer shares a common ancestor with the virus detected in outbreak 1. This suggests long-term circulation of H5N6 virus in the local wild bird population. In addition, the pathogenicity of H5N6 virus in ducks was determined, and compared to that of H5N8 viruses detected in 2014 and 2016. A similar high pathogenicity was measured for H5N6 and H5N8 group B viruses, suggesting that biological or ecological factors in the wild bird population may have affected the mortality rates during the H5N6 epidemic. These observations suggest different infection dynamics for the H5N6 and H5N8 group B viruses in the wild bird population.

DOI: 10.1111/tbed.13169
PubMed: 30874364
PubMed Central: PMC6849594

Affiliations:

Pays-Bas

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000013
to stream Main, to step Curation: 000013

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic relationship between poultry and wild bird viruses during the highly pathogenic avian influenza H5N6 epidemic in the Netherlands, 2017-2018.</title>
<author><name sortKey="Beerens, N" sort="Beerens, N" uniqKey="Beerens N" first="N" last="Beerens">N. Beerens</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Heutink, R" sort="Heutink, R" uniqKey="Heutink R" first="R" last="Heutink">R. Heutink</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Pritz Verschuren, S" sort="Pritz Verschuren, S" uniqKey="Pritz Verschuren S" first="S" last="Pritz-Verschuren">S. Pritz-Verschuren</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Germeraad, E A" sort="Germeraad, E A" uniqKey="Germeraad E" first="E A" last="Germeraad">E A Germeraad</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bergervoet, S A" sort="Bergervoet, S A" uniqKey="Bergervoet S" first="S A" last="Bergervoet">S A Bergervoet</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Harders, F" sort="Harders, F" uniqKey="Harders F" first="F" last="Harders">F. Harders</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bossers, A" sort="Bossers, A" uniqKey="Bossers A" first="A" last="Bossers">A. Bossers</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Koch, G" sort="Koch, G" uniqKey="Koch G" first="G" last="Koch">G. Koch</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2019">2019</date>
<idno type="RBID">pubmed:30874364</idno>
<idno type="pmid">30874364</idno>
<idno type="doi">10.1111/tbed.13169</idno>
<idno type="pmc">PMC6849594</idno>
<idno type="wicri:Area/Main/Corpus">000013</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000013</idno>
<idno type="wicri:Area/Main/Curation">000013</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000013</idno>
<idno type="wicri:Area/Main/Exploration">000013</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic relationship between poultry and wild bird viruses during the highly pathogenic avian influenza H5N6 epidemic in the Netherlands, 2017-2018.</title>
<author><name sortKey="Beerens, N" sort="Beerens, N" uniqKey="Beerens N" first="N" last="Beerens">N. Beerens</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Heutink, R" sort="Heutink, R" uniqKey="Heutink R" first="R" last="Heutink">R. Heutink</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Pritz Verschuren, S" sort="Pritz Verschuren, S" uniqKey="Pritz Verschuren S" first="S" last="Pritz-Verschuren">S. Pritz-Verschuren</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Germeraad, E A" sort="Germeraad, E A" uniqKey="Germeraad E" first="E A" last="Germeraad">E A Germeraad</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bergervoet, S A" sort="Bergervoet, S A" uniqKey="Bergervoet S" first="S A" last="Bergervoet">S A Bergervoet</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Harders, F" sort="Harders, F" uniqKey="Harders F" first="F" last="Harders">F. Harders</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bossers, A" sort="Bossers, A" uniqKey="Bossers A" first="A" last="Bossers">A. Bossers</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Koch, G" sort="Koch, G" uniqKey="Koch G" first="G" last="Koch">G. Koch</name>
<affiliation wicri:level="1"><nlm:affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</nlm:affiliation>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Wageningen Bioveterinary Research, Lelystad</wicri:regionArea>
<wicri:noRegion>Lelystad</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Transboundary and emerging diseases</title>
<idno type="eISSN">1865-1682</idno>
<imprint><date when="2019" type="published">2019</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term>
<term>Animals, Wild (MeSH)</term>
<term>Birds (MeSH)</term>
<term>Disease Outbreaks (veterinary)</term>
<term>Epidemics (veterinary)</term>
<term>Influenza A Virus, H5N8 Subtype (genetics)</term>
<term>Influenza A Virus, H5N8 Subtype (isolation & purification)</term>
<term>Influenza A Virus, H5N8 Subtype (pathogenicity)</term>
<term>Influenza A virus (genetics)</term>
<term>Influenza A virus (isolation & purification)</term>
<term>Influenza A virus (pathogenicity)</term>
<term>Influenza in Birds (epidemiology)</term>
<term>Influenza in Birds (virology)</term>
<term>Netherlands (epidemiology)</term>
<term>Poultry (MeSH)</term>
<term>Poultry Diseases (epidemiology)</term>
<term>Poultry Diseases (virology)</term>
<term>Whole Genome Sequencing (veterinary)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Animaux (MeSH)</term>
<term>Animaux sauvages (MeSH)</term>
<term>Grippe chez les oiseaux (virologie)</term>
<term>Grippe chez les oiseaux (épidémiologie)</term>
<term>Maladies de la volaille (virologie)</term>
<term>Maladies de la volaille (épidémiologie)</term>
<term>Oiseaux (MeSH)</term>
<term>Pays-Bas (épidémiologie)</term>
<term>Sous-type H5N8 du virus de la grippe A (génétique)</term>
<term>Sous-type H5N8 du virus de la grippe A (isolement et purification)</term>
<term>Sous-type H5N8 du virus de la grippe A (pathogénicité)</term>
<term>Séquençage du génome entier (médecine vétérinaire)</term>
<term>Virus de la grippe A (génétique)</term>
<term>Virus de la grippe A (isolement et purification)</term>
<term>Virus de la grippe A (pathogénicité)</term>
<term>Volaille (MeSH)</term>
<term>Épidémies (médecine vétérinaire)</term>
<term>Épidémies de maladies (médecine vétérinaire)</term>
</keywords>
<keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Netherlands</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Influenza in Birds</term>
<term>Poultry Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A Virus, H5N8 Subtype</term>
<term>Influenza A virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Sous-type H5N8 du virus de la grippe A</term>
<term>Virus de la grippe A</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A Virus, H5N8 Subtype</term>
<term>Influenza A virus</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Sous-type H5N8 du virus de la grippe A</term>
<term>Virus de la grippe A</term>
</keywords>
<keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Séquençage du génome entier</term>
<term>Épidémies</term>
<term>Épidémies de maladies</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Influenza A Virus, H5N8 Subtype</term>
<term>Influenza A virus</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Sous-type H5N8 du virus de la grippe A</term>
<term>Virus de la grippe A</term>
</keywords>
<keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Disease Outbreaks</term>
<term>Epidemics</term>
<term>Whole Genome Sequencing</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe chez les oiseaux</term>
<term>Maladies de la volaille</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza in Birds</term>
<term>Poultry Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Grippe chez les oiseaux</term>
<term>Maladies de la volaille</term>
<term>Pays-Bas</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Animals, Wild</term>
<term>Birds</term>
<term>Poultry</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Animaux</term>
<term>Animaux sauvages</term>
<term>Oiseaux</term>
<term>Volaille</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Pays-Bas</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">In the Netherlands, three commercial poultry farms and two hobby holdings were infected with highly pathogenic avian influenza (HPAI) H5N6 virus in the winter of 2017-2018. This H5N6 virus is a reassortant of HPAI H5N8 clade 2.3.4.4 group B viruses detected in Eurasia in 2016. H5N6 viruses were also detected in several dead wild birds during the winter. However, wild bird mortality was limited compared to the caused by the H5N8 group B virus in 2016-2017. H5N6 virus was not detected in wild birds after March, but in late summer infected wild birds were found again. In this study, the complete genome sequences of poultry and wild bird viruses were determined to study their genetic relationship. Genetic analysis showed that the outbreaks in poultry were not the result of farm-to-farm transmissions, but rather resulted from separate introductions from wild birds. Wild birds infected with viruses related to the first outbreak in poultry were found at short distances from the farm, within a short time frame. However, no wild bird viruses related to outbreaks 2 and 3 were detected. The H5N6 virus isolated in summer shares a common ancestor with the virus detected in outbreak 1. This suggests long-term circulation of H5N6 virus in the local wild bird population. In addition, the pathogenicity of H5N6 virus in ducks was determined, and compared to that of H5N8 viruses detected in 2014 and 2016. A similar high pathogenicity was measured for H5N6 and H5N8 group B viruses, suggesting that biological or ecological factors in the wild bird population may have affected the mortality rates during the H5N6 epidemic. These observations suggest different infection dynamics for the H5N6 and H5N8 group B viruses in the wild bird population.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">30874364</PMID>
<DateCompleted><Year>2019</Year>
<Month>08</Month>
<Day>30</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>04</Month>
<Day>16</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1865-1682</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>66</Volume>
<Issue>3</Issue>
<PubDate><Year>2019</Year>
<Month>May</Month>
</PubDate>
</JournalIssue>
<Title>Transboundary and emerging diseases</Title>
<ISOAbbreviation>Transbound Emerg Dis</ISOAbbreviation>
</Journal>
<ArticleTitle>Genetic relationship between poultry and wild bird viruses during the highly pathogenic avian influenza H5N6 epidemic in the Netherlands, 2017-2018.</ArticleTitle>
<Pagination><MedlinePgn>1370-1378</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1111/tbed.13169</ELocationID>
<Abstract><AbstractText>In the Netherlands, three commercial poultry farms and two hobby holdings were infected with highly pathogenic avian influenza (HPAI) H5N6 virus in the winter of 2017-2018. This H5N6 virus is a reassortant of HPAI H5N8 clade 2.3.4.4 group B viruses detected in Eurasia in 2016. H5N6 viruses were also detected in several dead wild birds during the winter. However, wild bird mortality was limited compared to the caused by the H5N8 group B virus in 2016-2017. H5N6 virus was not detected in wild birds after March, but in late summer infected wild birds were found again. In this study, the complete genome sequences of poultry and wild bird viruses were determined to study their genetic relationship. Genetic analysis showed that the outbreaks in poultry were not the result of farm-to-farm transmissions, but rather resulted from separate introductions from wild birds. Wild birds infected with viruses related to the first outbreak in poultry were found at short distances from the farm, within a short time frame. However, no wild bird viruses related to outbreaks 2 and 3 were detected. The H5N6 virus isolated in summer shares a common ancestor with the virus detected in outbreak 1. This suggests long-term circulation of H5N6 virus in the local wild bird population. In addition, the pathogenicity of H5N6 virus in ducks was determined, and compared to that of H5N8 viruses detected in 2014 and 2016. A similar high pathogenicity was measured for H5N6 and H5N8 group B viruses, suggesting that biological or ecological factors in the wild bird population may have affected the mortality rates during the H5N6 epidemic. These observations suggest different infection dynamics for the H5N6 and H5N8 group B viruses in the wild bird population.</AbstractText>
<CopyrightInformation>© 2019 The Authors. Transboundary and Emerging Diseases published by Blackwell Verlag GmbH.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Beerens</LastName>
<ForeName>N</ForeName>
<Initials>N</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0001-6756-4431</Identifier>
<AffiliationInfo><Affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Heutink</LastName>
<ForeName>R</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Pritz-Verschuren</LastName>
<ForeName>S</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Germeraad</LastName>
<ForeName>E A</ForeName>
<Initials>EA</Initials>
<AffiliationInfo><Affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bergervoet</LastName>
<ForeName>S A</ForeName>
<Initials>SA</Initials>
<Identifier Source="ORCID">https://orcid.org/0000-0002-1857-2715</Identifier>
<AffiliationInfo><Affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Harders</LastName>
<ForeName>F</ForeName>
<Initials>F</Initials>
<AffiliationInfo><Affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bossers</LastName>
<ForeName>A</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Koch</LastName>
<ForeName>G</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Wageningen Bioveterinary Research, Lelystad, the Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y"><Grant><Agency>Dutch Ministry of Agriculture, Nature and Food Quality</Agency>
<Country></Country>
</Grant>
</GrantList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2019</Year>
<Month>04</Month>
<Day>05</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Germany</Country>
<MedlineTA>Transbound Emerg Dis</MedlineTA>
<NlmUniqueID>101319538</NlmUniqueID>
<ISSNLinking>1865-1674</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000835" MajorTopicYN="N">Animals, Wild</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001717" MajorTopicYN="N">Birds</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004196" MajorTopicYN="N">Disease Outbreaks</DescriptorName>
<QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058872" MajorTopicYN="N">Epidemics</DescriptorName>
<QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000071225" MajorTopicYN="N">Influenza A Virus, H5N8 Subtype</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
<QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
<QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009426" MajorTopicYN="N" Type="Geographic">Netherlands</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011200" MajorTopicYN="N">Poultry</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011201" MajorTopicYN="N">Poultry Diseases</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000073336" MajorTopicYN="N">Whole Genome Sequencing</DescriptorName>
<QualifierName UI="Q000662" MajorTopicYN="N">veterinary</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Avian influenza</Keyword>
<Keyword MajorTopicYN="N">H5N6</Keyword>
<Keyword MajorTopicYN="N">full genome sequencing</Keyword>
<Keyword MajorTopicYN="N">genetic analysis</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year>
<Month>12</Month>
<Day>12</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2019</Year>
<Month>02</Month>
<Day>08</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2019</Year>
<Month>03</Month>
<Day>10</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2019</Year>
<Month>3</Month>
<Day>16</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2019</Year>
<Month>8</Month>
<Day>31</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2019</Year>
<Month>3</Month>
<Day>16</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">30874364</ArticleId>
<ArticleId IdType="doi">10.1111/tbed.13169</ArticleId>
<ArticleId IdType="pmc">PMC6849594</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Annu Rev Anim Biosci. 2015;3:347-73</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25422855</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Evol Biol. 2015 Jun 26;15:120</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26111936</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS Pathog. 2011 Jun;7(6):e1002094</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21731491</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2015 May;21(5):872-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25897965</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Virology. 1999 Aug 15;261(1):15-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10484749</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Avian Dis. 2007 Mar;51(1 Suppl):373-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17494587</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2017 Dec;23(12):1974-1981</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29148396</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2015 Nov;89(21):10993-1001</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26311890</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Microbes Infect. 2018 Apr 18;7(1):67</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29670093</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Hum Genet. 2009 Mar;54(3):174-81</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19322152</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2017 Dec;23(12):2050-2054</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29148372</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Vet Sci. 2017 Aug 31;18(S1):269-280</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28859267</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2016 Jul;22(7):1283-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27314845</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Vet Res. 2013 Jul 22;44:62</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23876184</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2018 Apr 17;24(4):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29381134</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2016 Oct 14;354(6309):213-217</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27738169</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Euro Surveill. 2015 Jul 02;20(26):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26159311</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Pays-Bas</li>
</country>
</list>
<tree><country name="Pays-Bas"><noRegion><name sortKey="Beerens, N" sort="Beerens, N" uniqKey="Beerens N" first="N" last="Beerens">N. Beerens</name>
</noRegion>
<name sortKey="Bergervoet, S A" sort="Bergervoet, S A" uniqKey="Bergervoet S" first="S A" last="Bergervoet">S A Bergervoet</name>
<name sortKey="Bossers, A" sort="Bossers, A" uniqKey="Bossers A" first="A" last="Bossers">A. Bossers</name>
<name sortKey="Germeraad, E A" sort="Germeraad, E A" uniqKey="Germeraad E" first="E A" last="Germeraad">E A Germeraad</name>
<name sortKey="Harders, F" sort="Harders, F" uniqKey="Harders F" first="F" last="Harders">F. Harders</name>
<name sortKey="Heutink, R" sort="Heutink, R" uniqKey="Heutink R" first="R" last="Heutink">R. Heutink</name>
<name sortKey="Koch, G" sort="Koch, G" uniqKey="Koch G" first="G" last="Koch">G. Koch</name>
<name sortKey="Pritz Verschuren, S" sort="Pritz Verschuren, S" uniqKey="Pritz Verschuren S" first="S" last="Pritz-Verschuren">S. Pritz-Verschuren</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/GrippePaysBasV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000014 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000014 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    GrippePaysBasV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:30874364
   |texte=   Genetic relationship between poultry and wild bird viruses during the highly pathogenic avian influenza H5N6 epidemic in the Netherlands, 2017-2018.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:30874364" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a GrippePaysBasV1

This area was generated with Dilib version V0.6.35.
Data generation: Mon Aug 10 10:18:30 2020. Site generation: Sat Mar 27 13:53:34 2021

	Serveur d'exploration sur la grippe aux Pays-Bas
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration sur la grippe aux Pays-Bas

Genetic relationship between poultry and wild bird viruses during the highly pathogenic avian influenza H5N6 epidemic in the Netherlands, 2017-2018.

Genetic relationship between poultry and wild bird viruses during the highly pathogenic avian influenza H5N6 epidemic in the Netherlands, 2017-2018.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki